PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004923-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 593aa MW: 67544.3 Da PI: 5.6783

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004923-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.3	2.8e-30	440	531	1	86
trihelix 1 rWtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ + ++++k+plWe++s+km e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpy++ql AUR62004923-RA 440 RWPRDEVLALINIRCSLFNNNGgetphdtETSSKGPLWERISQKMTELGYKRSAKRCKEKWENINKYFRKTKDLNKKR-SVDSRTCPYYHQLS 531 8***********987776663333333357*****************************************8.78889*****96 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
PTFDVPYGHL LHHHHHHHSQ FLTRNEVVKD ETLQLDPTRL EDGGETQRSS SSSSLMLLPE 60 LPWSNDEMLA LFRIRSSMDN TWFPDFIWEN VSRLFGELEE LCNNNNTNNI NVDHDNDGDD 120 HQKGSLPDQC ERDHHNLETC LSQGDVCVDD GKEEEEEEDD ERQKIEDDEI REDNDKSNDN 180 DEVVEDEQQQ SVDDSEKTEE STKRVMKKRK RQKKFEMFKG FCEKIVSKMM AQQEELHCKI 240 IRDMVKRDEE KIAKEEAWKR QEFERLEKEL DARAHEQAVS GDRHTKILGF LNKFSTSSSS 300 FLETQSFKEA LEKLNKVPKM TSSNSSILTQ DSICVQLQPN SSCTTHTPLV NNIPSSSSNE 360 NLALDNSKST LPLKSSSLDH QNPNNPLPSH QNEPLKIPSL VSSRKFSSSE HTSTNAADHI 420 TNTKALENIK SGNKDDTGRR WPRDEVLALI NIRCSLFNNN GGETPHDTET SSKGPLWERI 480 SQKMTELGYK RSAKRCKEKW ENINKYFRKT KDLNKKRSVD SRTCPYYHQL SHLYSQGSLV 540 GPANHPGSPE NRSMAMSGQS QGNGSSNPPA NNGATNSMQG NEANVVQLYR YG*

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

PTFDVPYGHL LHHHHHHHSQ FLTRNEVVKD ETLQLDPTRL EDGGETQRSS SSSSLMLLPE  60
LPWSNDEMLA LFRIRSSMDN TWFPDFIWEN VSRLFGELEE LCNNNNTNNI NVDHDNDGDD  120
HQKGSLPDQC ERDHHNLETC LSQGDVCVDD GKEEEEEEDD ERQKIEDDEI REDNDKSNDN  180
DEVVEDEQQQ SVDDSEKTEE STKRVMKKRK RQKKFEMFKG FCEKIVSKMM AQQEELHCKI  240
IRDMVKRDEE KIAKEEAWKR QEFERLEKEL DARAHEQAVS GDRHTKILGF LNKFSTSSSS  300
FLETQSFKEA LEKLNKVPKM TSSNSSILTQ DSICVQLQPN SSCTTHTPLV NNIPSSSSNE  360
NLALDNSKST LPLKSSSLDH QNPNNPLPSH QNEPLKIPSL VSSRKFSSSE HTSTNAADHI  420
TNTKALENIK SGNKDDTGRR WPRDEVLALI NIRCSLFNNN GGETPHDTET SSKGPLWERI  480
SQKMTELGYK RSAKRCKEKW ENINKYFRKT KDLNKKRSVD SRTCPYYHQL SHLYSQGSLV  540
GPANHPGSPE NRSMAMSGQS QGNGSSNPPA NNGATNSMQG NEANVVQLYR YG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	214	KKRKRQKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	3e-43	Trihelix family protein