PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004973-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 481aa MW: 52903.8 Da PI: 6.5977

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004973-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	52	67	12	27
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 tGtCk+G +C+F+H+p AUR62004973-RA 52 TGTCKFGQNCRFNHPP 67 8*************97 PP
2	zf-CCCH	33.7	6e-11	134	156	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C f++rtG C yG +C+F+H+ AUR62004973-RA 134 QECTFYLRTGSCGYGVNCRFHHP 156 68********************9 PP
3	zf-CCCH	34.6	3.2e-11	280	305	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++tG Cky + C+++H+ AUR62004973-RA 280 PGQPDCDFFMKTGDCKYRAACRYNHP 305 5789*********************9 PP
4	zf-CCCH	25.8	1.8e-08	360	386	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ff++tG Ck+ + C+++H++ AUR62004973-RA 360 PGQPECEFFMKTGNCKFKSACRYHHPR 386 5789*********************96 PP
5	zf-CCCH	27.2	6.8e-09	408	431	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + Cr++ GtCkyG +C F+H+ AUR62004973-RA 408 SKVCRNYELQGTCKYGRNCLFHHP 431 678********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MGTCEEISSS IEIQNEIKLG ISPSGTHWDE QVTEEELLAQ QFESVVLQGN GTGTCKFGQN 60 CRFNHPPEKG FKVALDQEKG IEENNGTFVD PGKIDCKGGC KYGDACRYNH SAQKVENEGP 120 ELNFLGLPVR PSEQECTFYL RTGSCGYGVN CRFHHPDPIA SKESEARNSL GNGVYARGGN 180 NFSGMYVGDP LQTSGVARGI PDLANGLSSM NGLPYAEMSS YHQALPQNAR WNQDQAQVNL 240 SLSAKKTPLP HQIVNNLSKK ADPTTHYEHL LQSEEFPLRP GQPDCDFFMK TGDCKYRAAC 300 RYNHPVSQES KLRLPLLSSK GLYSKSKNPE LPNLNPGNPR KNGTSHQQQQ MQNGQYPERP 360 GQPECEFFMK TGNCKFKSAC RYHHPRDRMS TSSSCALNES GLPLRPGSKV CRNYELQGTC 420 KYGRNCLFHH PDNSSPAISA APIPPVADQD HSSPNPEVAT NLESPAGDNV ESDWGDGWVM 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MGTCEEISSS IEIQNEIKLG ISPSGTHWDE QVTEEELLAQ QFESVVLQGN GTGTCKFGQN  60
CRFNHPPEKG FKVALDQEKG IEENNGTFVD PGKIDCKGGC KYGDACRYNH SAQKVENEGP  120
ELNFLGLPVR PSEQECTFYL RTGSCGYGVN CRFHHPDPIA SKESEARNSL GNGVYARGGN  180
NFSGMYVGDP LQTSGVARGI PDLANGLSSM NGLPYAEMSS YHQALPQNAR WNQDQAQVNL  240
SLSAKKTPLP HQIVNNLSKK ADPTTHYEHL LQSEEFPLRP GQPDCDFFMK TGDCKYRAAC  300
RYNHPVSQES KLRLPLLSSK GLYSKSKNPE LPNLNPGNPR KNGTSHQQQQ MQNGQYPERP  360
GQPECEFFMK TGNCKFKSAC RYHHPRDRMS TSSSCALNES GLPLRPGSKV CRNYELQGTC  420
KYGRNCLFHH PDNSSPAISA APIPPVADQD HSSPNPEVAT NLESPAGDNV ESDWGDGWVM  480
*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	6e-60	C3H family protein