PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62005080-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family NF-YC
Protein Properties Length: 250aa    MW: 27509.3 Da    PI: 6.0023
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62005080-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.56.2e-56691721101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  AUR62005080-RA  69 QLQSFWQNQyqdIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 163
                     89******9999*********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivpr++l
  AUR62005080-RA 164 VDIVPREDL 172
                     ******987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MDQQGHGQAP VVGTVSGAGQ VPYVGAYQPN QVTGAPVHGS AQPSGAQMAQ HQLAYXXXXX  60
XXXXXXQQQL QSFWQNQYQD IEKVTDFKNH SLPLARIKKI MKADEDVRMI SAEAPVVFAR  120
ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDDVLATL  180
PRGTGMPVAG PTDALPYYFM PPAQNPAQAG PPGVMMGNPN AYAAQSQPYM GQPMWPQQPP  240
QRQQSSSDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.35e-69NF-YC family protein