PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62005563-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Trihelix
Protein Properties Length: 366aa    MW: 41879.3 Da    PI: 5.8034
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62005563-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.71.7e-191691786
        trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    m++ ++++k++k+lWe++s+kmr+rgf rsp++C++kw+nl k++kk k+++++ ++++  ++  ++++e
  AUR62005563-RA  1 MDSLFNTSKSNKHLWEQISAKMRDRGFDRSPTMCTDKWRNLLKEFKKAKQQMGNAANGNA-KMLCYKEIE 69
                    67889************************************************9866665.777777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MDSLFNTSKS NKHLWEQISA KMRDRGFDRS PTMCTDKWRN LLKEFKKAKQ QMGNAANGNA  60
KMLCYKEIEE ILRDRNRCVT NSAGYKSPNH NSNDGVNNHS SKVDSFLQFS DKGIDDASIP  120
FGPIEEMHKP KKIKIEEPMG IKIEEQMIVE PMIEEPLKIK IEEPMKIMIE EEEIANGRPT  180
LNLERRLDHE GHPLAITAAD AVTDGGCPPS FWRETPGNGD DTHPFGGRVI IVKWGDYTKR  240
IGVEGTAEAI KDVIRSAFGL RTKRAFWLED EEQVARSLDR DMPLGTYTLH LDHGMTIKLC  300
YEESDHISYP GQTISHTVDK TFYTEDDFRE LMHRRGWSCL RELNGYRTID NLDDLRPDEV  360
YRGVT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-137Trihelix family protein