PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62005643-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 84aa    MW: 9524.22 Da    PI: 11.2775
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62005643-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.5e-29958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krie+ks rqvtfskRr g++KKA ELSvLCd++vav++fs++g+lye+ 
  AUR62005643-RA  9 KRIEDKSSRQVTFSKRRSGLIKKARELSVLCDVDVAVLVFSNRGRLYEFV 58
                    79***********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    
MGRRKIEMKR IEDKSSRQVT FSKRRSGLIK KARELSVLCD VDVAVLVFSN RGRLYEFVSG  60
SSSSSRLVFL FFLALISFDL VFV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-25MIKC_MADS family protein