PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62005644-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 28587.5 Da    PI: 8.8419
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62005644-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  AUR62005644-RA  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box93.14.8e-31961821298
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     a + s+qqe+ kLk+++e+L r++R+l+GedL++Ls keL++Le+qL+ slk+iRs +++ +++q+ +lq+ke++l+e+n++L+++l
  AUR62005644-RA  96 ALEISSQQEYLKLKARYESLLRTHRNLMGEDLGPLSSKELESLERQLDMSLKQIRSIRTQCMVDQLTDLQRKEHMLNEANRTLKQRL 182
                     445689******************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
PSYSIHSLPS SMLKTLEKYQ KSNYGPPDNT VSTREALEIS SQQEYLKLKA RYESLLRTHR  120
NLMGEDLGPL SSKELESLER QLDMSLKQIR SIRTQCMVDQ LTDLQRKEHM LNEANRTLKQ  180
RLIEANQASS LQWGNVQDVG YGRQPAQPHD DTFFHPLDCE PTLQMGYQPD AVNAAAAAGA  240
NANNFLPNWL P*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-100MIKC_MADS family protein