PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62005735-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Whirly
Protein Properties Length: 244aa    MW: 26959.3 Da    PI: 9.5972
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62005735-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly71.91.1e-22104161158
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfals 58 
                     s+yk+kaal+v++++p+f+ ldsg++k++r+G +ll++a+a+++r+ydW++kq+ +l+
  AUR62005735-RA 104 SIYKGKAALTVEPKAPEFVPLDSGAFKVSREGYVLLQFAPAAGVRQYDWSRKQTSSLA 161
                     7****************************************************98886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MVQQLLSSSS SNFSIGAQFQ NHGPTSLPYL SLSSHNSIIT NTAQFKLPRN WVSHVSSSKL  60
SLSVKCRQSS EYFDKSPPRF SPSYSPNPST TSSGFPPKVF VGHSIYKGKA ALTVEPKAPE  120
FVPLDSGAFK VSREGYVLLQ FAPAAGVRQY DWSRKQTSSL ALDLLGSEHP LQYIQGVQNK  180
LLNLDENVYI PISKAEFAVL VTAFNFVLPY LLGWNVFADN IKPDDSNRIN SSNTRTGDYE  240
WNR*