PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62006536-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SRS

Protein Properties

Length: 242aa MW: 24289.6 Da PI: 8.6568

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62006536-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213.3	5.8e-66	7	180	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..............aeaaskrkrelkskkq 83 sg+ +CqdCGnqakkdC+h+RCRtCC+srgfdC+thvkstWvpaa+rrerq + ++ + + +++ +k++r +s+++ AUR62006536-RA 7 SGALTCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPAARRRERQMMGVPGAAGTHGTGggsvggggggassgSTSGAKKPRLISSQNT 101 78899*******************************************8876655444443336779**99887888899998877777 PP DUF702 84 salsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++s+t++s++ +++++etss lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG e AUR62006536-RA 102 ATTSHTSTSNT-PPRSFETSSshqdasfkdsLPGQVKAPAVFKCVRVTAVDDGEDEFAYQAVVKIGGHVFKGFLYDQGFE 180 77777776666.677888877799****************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGCGGGSGAL TCQDCGNQAK KDCSHRRCRT CCRSRGFDCS THVKSTWVPA ARRRERQMMG 60 VPGAAGTHGT GGGSVGGGGG GASSGSTSGA KKPRLISSQN TATTSHTSTS NTPPRSFETS 120 SSHQDASFKD SLPGQVKAPA VFKCVRVTAV DDGEDEFAYQ AVVKIGGHVF KGFLYDQGFE 180 PRDGFPNLSE LHLGGGAAAS SSAGRNGGAS SSSPLLDPSD VYGASGGGGL LGGSSYGNTI 240 N*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	5e-54	SRS family protein