PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62006590-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 552aa MW: 60205.7 Da PI: 4.9536

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62006590-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.2e-18	40	87	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l AUR62006590-RA 40 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 87 79******************************************9986 PP
2	Myb_DNA-binding	52.2	1.4e-16	93	136	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ AUR62006590-RA 93 KGSFTPEEENRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 136 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MIEMTSDSDK RKAARCRKNS PGAEEVSSGG NSSGGSCLKK GPWTSAEDAI LVEYVTKHGE 60 GNWNAVQKHS GLSRCGKSCR LRWANHLRPD LKKGSFTPEE ENRIIELHAK MGNKWARMAA 120 ELPGRTDNEI KNYWNTRIKR LLRAGLPIYP PSVSRQARND SQQSEEMMTC QSGDMHHSES 180 SDTNSFQIPE VEFKNFGLDP ALLDLAPASL LPKGVSSSNS YGFMFSSLNP QKRLREVDSQ 240 FHVTVPSTSI TFPKFEQHED DPFGRLVPVQ PLWSPPIYDP DLNINGTSAI DVLGSHAPIN 300 GNSSSSEPVS EAMKLELPSL QYSASQVGSW ATPSSPLPSL ESVDTLIQSP LSEHTQSNCP 360 SPRSSGLLEA IVYESQSLKC SNYNSHQQGL DTSVMAGDVV ESSSRNVCEP KWDACGDPIS 420 PLSHSAASVF VEFTPVSGGS SSDEPQSAEP ETIPGKFDWI SAELDGKKDI SCPLEYLRPD 480 ALLDSYWFSH RIGRSKDESI TGDFGALLGD DFNYEHKQGS ALPCDESNQS SGLGTSTWDT 540 ICGVYPFSKN N*

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MIEMTSDSDK RKAARCRKNS PGAEEVSSGG NSSGGSCLKK GPWTSAEDAI LVEYVTKHGE  60
GNWNAVQKHS GLSRCGKSCR LRWANHLRPD LKKGSFTPEE ENRIIELHAK MGNKWARMAA  120
ELPGRTDNEI KNYWNTRIKR LLRAGLPIYP PSVSRQARND SQQSEEMMTC QSGDMHHSES  180
SDTNSFQIPE VEFKNFGLDP ALLDLAPASL LPKGVSSSNS YGFMFSSLNP QKRLREVDSQ  240
FHVTVPSTSI TFPKFEQHED DPFGRLVPVQ PLWSPPIYDP DLNINGTSAI DVLGSHAPIN  300
GNSSSSEPVS EAMKLELPSL QYSASQVGSW ATPSSPLPSL ESVDTLIQSP LSEHTQSNCP  360
SPRSSGLLEA IVYESQSLKC SNYNSHQQGL DTSVMAGDVV ESSSRNVCEP KWDACGDPIS  420
PLSHSAASVF VEFTPVSGGS SSDEPQSAEP ETIPGKFDWI SAELDGKKDI SCPLEYLRPD  480
ALLDSYWFSH RIGRSKDESI TGDFGALLGD DFNYEHKQGS ALPCDESNQS SGLGTSTWDT  540
ICGVYPFSKN N*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-82	MYB family protein