PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62006826-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 980aa MW: 110304 Da PI: 4.91

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62006826-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.8e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l AUR62006826-RA 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l AUR62006826-RA 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD DNYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDVRQR KRKRKGIDYN AEIPFEKRPP PGFYDVVEED RPVEQPKFPT 240 TIDELEGERR VDREARLRKQ DIAKNKIAER QDAPGAIMQA NKLNDPETVR KRSKLMLPPP 300 QISDQELEEI ARMGYASDLL AGNQDLADGS GATHALLANY SQTPRQGMTP MRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGDNPDL HPSDFSGVTP KKRDVQTPNP MLTPSATPGG 420 TSLTPRIGMT PSRDGNSFSM TPKGTPIRDE LRINEEMDMH DSAKLELRRQ AELKRNLRMG 480 LSGLPEPKNE YEVVVRPEPE DSEDPEEMIE EDMSDRLARE KAAEEARQQA LLRKRSKVLQ 540 RELPRPPSAS VELIKNSLMR AGEDKSSFVP PTDIEQADEM VRKELLSLLE HDNAKYPLSE 600 KEQKKAAKRS ANTVPVIEDF ELDELKEAGS FIEEEAQYLC VAMGHQEETL DDFVEAHKTC 660 LNDLMYFPTR NAYGLSSVAG TVEKLAALQN EFENVKRKMD DDNKKAQRLE KKIDVLTHGY 720 KMRADKLKTQ IELTFKQMNT AGTELDCFLA LQRQENMAAS FRIKGLWEEV QKQKEVEKTL 780 QKRYGDRVAE LESIRQLMDQ YRKAEEIEAK KQLEELANNA ANQASLLSSE TPEPVSAMEV 840 DSSDDVRPQE DGEASETVNR ASLQNIMHTD GDVASIADTP SISLASEAKG SEAAMEQNVG 900 DTNVPNSILD NTDHPVGEAL ENNGFVDGEP VSISKLETQE VDGELSSQIN EAEGNKLMID 960 GDVGKPVERV EDGASNNQV*

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD DNYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRQR KRKRKGIDYN AEIPFEKRPP PGFYDVVEED RPVEQPKFPT  240
TIDELEGERR VDREARLRKQ DIAKNKIAER QDAPGAIMQA NKLNDPETVR KRSKLMLPPP  300
QISDQELEEI ARMGYASDLL AGNQDLADGS GATHALLANY SQTPRQGMTP MRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGDNPDL HPSDFSGVTP KKRDVQTPNP MLTPSATPGG  420
TSLTPRIGMT PSRDGNSFSM TPKGTPIRDE LRINEEMDMH DSAKLELRRQ AELKRNLRMG  480
LSGLPEPKNE YEVVVRPEPE DSEDPEEMIE EDMSDRLARE KAAEEARQQA LLRKRSKVLQ  540
RELPRPPSAS VELIKNSLMR AGEDKSSFVP PTDIEQADEM VRKELLSLLE HDNAKYPLSE  600
KEQKKAAKRS ANTVPVIEDF ELDELKEAGS FIEEEAQYLC VAMGHQEETL DDFVEAHKTC  660
LNDLMYFPTR NAYGLSSVAG TVEKLAALQN EFENVKRKMD DDNKKAQRLE KKIDVLTHGY  720
KMRADKLKTQ IELTFKQMNT AGTELDCFLA LQRQENMAAS FRIKGLWEEV QKQKEVEKTL  780
QKRYGDRVAE LESIRQLMDQ YRKAEEIEAK KQLEELANNA ANQASLLSSE TPEPVSAMEV  840
DSSDDVRPQE DGEASETVNR ASLQNIMHTD GDVASIADTP SISLASEAKG SEAAMEQNVG  900
DTNVPNSILD NTDHPVGEAL ENNGFVDGEP VSISKLETQE VDGELSSQIN EAEGNKLMID  960
GDVGKPVERV EDGASNNQV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDVRQRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein