PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62006911-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 221aa    MW: 24705.6 Da    PI: 8.1854
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62006911-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.9e-234189149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    kri nk+ rqvtf+kRr g++KKA+ELS LC+ eva+i fs+ gkl+ +
  AUR62006911-RA 41 KRIINKTSRQVTFTKRRGGLFKKASELSSLCGSEVAIITFSEAGKLFSF 89
                    7999******************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MEEYLDDLRM EDQTLNFPED FIIEPIVMNK KKAGKQKIEM KRIINKTSRQ VTFTKRRGGL  60
FKKASELSSL CGSEVAIITF SEAGKLFSFG HPNADAVVSR YINYTRGVEN NNIINGGNGN  120
EFGTSVLSEQ YKRVLSNIEV EKKRSDHVIG SSSLSSNGSS PRGDNSEFGF WWDKPIDNLG  180
LLELEQLKGS LEGLRDQVSS RVNSINNNNN YYCSSNSTNR *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-38M-type_MADS family protein