PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007123-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HD-ZIP

Protein Properties

Length: 371aa MW: 40975.4 Da PI: 8.9258

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007123-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	8e-19	196	250	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k AUR62007123-RA 196 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 250 78889************************************************98 PP
2	HD-ZIP_I/II	127.8	4.4e-41	196	285	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l AUR62007123-RA 196 RKKLRLTKDQSAILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCEQLTEENRRLQKEVQELR-AL 285 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MMVAGKEDLG LSLCLGSSNP NNSNNTTTSN CGNNNNHPHN QNHNNIGFFM NNNNNNRNFH 60 HHQPQPQPQT TSSNASPLQL NLMMMPSLAS STASPSPLLQ KLPWNRSTDS FPPSSDRNSD 120 SSRSFLRGID VNRPAGGDEE DAGVSSPNST VSTVSGKRSS GERDSMTTAG AGDDIEVERA 180 SSRGFSDDED GGENSRKKLR LTKDQSAILE ESFKEHNTLN PKQKLALAKR LGLRPRQVEV 240 WFQNRRARTK LKQTEVDCEF LKRCCEQLTE ENRRLQKEVQ ELRALKLSPQ FYMQMNPPTT 300 LTMCPSCERV AVPPSATSSS PATQPQQQPS TTIPDSRPNH TAHHRPMPVN PWAVASPVPI 360 RSFEALRPRS *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MMVAGKEDLG LSLCLGSSNP NNSNNTTTSN CGNNNNHPHN QNHNNIGFFM NNNNNNRNFH  60
HHQPQPQPQT TSSNASPLQL NLMMMPSLAS STASPSPLLQ KLPWNRSTDS FPPSSDRNSD  120
SSRSFLRGID VNRPAGGDEE DAGVSSPNST VSTVSGKRSS GERDSMTTAG AGDDIEVERA  180
SSRGFSDDED GGENSRKKLR LTKDQSAILE ESFKEHNTLN PKQKLALAKR LGLRPRQVEV  240
WFQNRRARTK LKQTEVDCEF LKRCCEQLTE ENRRLQKEVQ ELRALKLSPQ FYMQMNPPTT  300
LTMCPSCERV AVPPSATSSS PATQPQQQPS TTIPDSRPNH TAHHRPMPVN PWAVASPVPI  360
RSFEALRPRS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	201	SRKKLRL
2	245	253	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	2e-91	HD-ZIP family protein