PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007158-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GATA

Protein Properties

Length: 548aa MW: 60989 Da PI: 6.3973

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007158-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.3	1.3e-15	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++TplWR+gp ++ LCnaCG ++r kg+ AUR62007158-RA 7 CYHCGVSSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MGKQGPCYHC GVSSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHS RVDPDDYEDH 60 RVGRVKTMSL KKRDDKISRR KYNYENSVDG EFIPDYSQGF QKNIDEDTSN RSSSGSAISN 120 SESCAQFGSA EASELTGPAQ SIVWDALVPS RKRTCVTRAK QSSVEKLTKD LYTILHEQQA 180 SHPSVSSEDD LLYESEAPMV SVEIGHGSVL IRHPSSIARE EESEASSLSV ENKLCRTDEG 240 YSNPASMLLF NDSKKVGSSC LGVEKVKRLN GHILQLEQVK REKYDHESIQ LLWNHDSLLC 300 NIDLTEIVNP DVFWGHLTDK EQQDLLKYLP TVDTSSVSDS LGSIFTSTHF KENISSFQKL 360 LADGVFDTSF SGIQTEDCKV LKRLALSNMT KCNWVEYRNS LKDKRTKESI GESVRISEAK 420 SCFSGNIPNA KRSRESQTHR WPETNGATKI PKRVLLKVDC KSKQPLQYEG SCFTPAPKNL 480 FTFPTNGSSL MLDSYQFEDE SSDQDLLLDV PSNGSYPQAE AELLCPSSSF ASQQASSSSI 540 PLSHFRP*

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MGKQGPCYHC GVSSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHS RVDPDDYEDH  60
RVGRVKTMSL KKRDDKISRR KYNYENSVDG EFIPDYSQGF QKNIDEDTSN RSSSGSAISN  120
SESCAQFGSA EASELTGPAQ SIVWDALVPS RKRTCVTRAK QSSVEKLTKD LYTILHEQQA  180
SHPSVSSEDD LLYESEAPMV SVEIGHGSVL IRHPSSIARE EESEASSLSV ENKLCRTDEG  240
YSNPASMLLF NDSKKVGSSC LGVEKVKRLN GHILQLEQVK REKYDHESIQ LLWNHDSLLC  300
NIDLTEIVNP DVFWGHLTDK EQQDLLKYLP TVDTSSVSDS LGSIFTSTHF KENISSFQKL  360
LADGVFDTSF SGIQTEDCKV LKRLALSNMT KCNWVEYRNS LKDKRTKESI GESVRISEAK  420
SCFSGNIPNA KRSRESQTHR WPETNGATKI PKRVLLKVDC KSKQPLQYEG SCFTPAPKNL  480
FTFPTNGSSL MLDSYQFEDE SSDQDLLLDV PSNGSYPQAE AELLCPSSSF ASQQASSSSI  540
PLSHFRP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-130	GATA family protein