PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62007472-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family YABBY
Protein Properties Length: 202aa    MW: 22344.2 Da    PI: 9.6809
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62007472-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY191.24.8e-59181812160
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes..hldeslkee.....lleelkveeenlksnveke 89 
                     d+fs seq+Cy+qC+ C+t+lavsvPs+sl+++vtvrCGhCt+ll  n +    + +  s  hl ++   +      +  l+   ++      ++
  AUR62007472-RA  18 DHFSPSEQLCYLQCSRCETVLAVSVPSSSLYRTVTVRCGHCTHLLPANTRSLLLQPPPASqyHLPHHH--NyyspnSHYRLGEMPNQAPNFSLTQ 110
                     799*******************************************9999988776554401443332..2223335555554444444444444 PP

           YABBY  90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                      +  +s  + + s+   +e+pr+p ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaakn 
  AUR62007472-RA 111 PNGASSYMNPSSSRGGPNELPRAPTTNRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNA 181
                     44444444445588999*****************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MSSSNTAASS TTTSLSLDHF SPSEQLCYLQ CSRCETVLAV SVPSSSLYRT VTVRCGHCTH  60
LLPANTRSLL LQPPPASQYH LPHHHNYYSP NSHYRLGEMP NQAPNFSLTQ PNGASSYMNP  120
SSSRGGPNEL PRAPTTNRPP EKRQRVPSAY NRFIKEEIQR IKAENPDISH REAFSAAAKN  180
ATSIFCLFFI RVAIVVRGRC R*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.18e-52YABBY family protein