PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007538-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GRF

Protein Properties

Length: 622aa MW: 67383 Da PI: 7.9978

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007538-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.2	3.4e-24	220	263	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e AUR62007538-RA 220 DPEPGRCRRTDGKKWRCSKDAVPDQKYCERHINRGRHRSRKPVE 263 79***************************************998 PP
2	QLQ	60.3	5.5e-21	150	186	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT+aQ+ +L++Q+++yKy+ an+PvP++Ll +i+k AUR62007538-RA 150 GPFTPAQWIELEHQAMIYKYITANVPVPANLLIPIRK 186 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MDFDGLVVGQ TAVSSSCSDH QNQILEGKPK CSINGSGLIK QERSDPFVDE DNRVAKIVKR 60 ADDLGLRSDN AVPKQQMLSF SSSTKPQQLS FLSAKDVNFI SDNKNAQNLL LSYFQQQQQQ 120 QLPSYSRTPA GFNHGNLNGS MHGSFSGIRG PFTPAQWIEL EHQAMIYKYI TANVPVPANL 180 LIPIRKALCS SGFPGFSFGS YPPHSYGWGT FHLGFSGSTD PEPGRCRRTD GKKWRCSKDA 240 VPDQKYCERH INRGRHRSRK PVEGHTGQAA SGPTNTKVIP AMSSSMSSLV TSTGGASNST 300 VTIAHQHHIK GLQPPGANNA AADSIVNRPR YPNVTFLESD YSLSKFNPQD SPLGFHDEQG 360 LSTMPPTMNL KTNDSPFSIA KQHIQLDDSS QSEFGLVSTD SLLNPTQKSA YLGCKSYNSS 420 ILEFNAQQTQ DQYPLRHFMD VWPKDNSNRS SIPWPEDSLK SDWTQLSMSI PMSTTDFSSS 480 SSPNQEKATV SPLRLSREFD PSQMGVGVGT IVGETGMKQN AWIPISWGNN SMGGPLGEVL 540 NNTSNITSAL NLKGDQRCDG SPQLGSSPTG VLQKSTFVSL SNSSSAGSPR AENKKTLEGA 600 NLCDDILGSA VHASSTFVPS M*

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MDFDGLVVGQ TAVSSSCSDH QNQILEGKPK CSINGSGLIK QERSDPFVDE DNRVAKIVKR  60
ADDLGLRSDN AVPKQQMLSF SSSTKPQQLS FLSAKDVNFI SDNKNAQNLL LSYFQQQQQQ  120
QLPSYSRTPA GFNHGNLNGS MHGSFSGIRG PFTPAQWIEL EHQAMIYKYI TANVPVPANL  180
LIPIRKALCS SGFPGFSFGS YPPHSYGWGT FHLGFSGSTD PEPGRCRRTD GKKWRCSKDA  240
VPDQKYCERH INRGRHRSRK PVEGHTGQAA SGPTNTKVIP AMSSSMSSLV TSTGGASNST  300
VTIAHQHHIK GLQPPGANNA AADSIVNRPR YPNVTFLESD YSLSKFNPQD SPLGFHDEQG  360
LSTMPPTMNL KTNDSPFSIA KQHIQLDDSS QSEFGLVSTD SLLNPTQKSA YLGCKSYNSS  420
ILEFNAQQTQ DQYPLRHFMD VWPKDNSNRS SIPWPEDSLK SDWTQLSMSI PMSTTDFSSS  480
SSPNQEKATV SPLRLSREFD PSQMGVGVGT IVGETGMKQN AWIPISWGNN SMGGPLGEVL  540
NNTSNITSAL NLKGDQRCDG SPQLGSSPTG VLQKSTFVSL SNSSSAGSPR AENKKTLEGA  600
NLCDDILGSA VHASSTFVPS M*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	6e-97	GRF family protein