PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62007715-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 100aa MW: 11416.9 Da PI: 7.6113

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62007715-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.5	2.6e-21	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krien snrqvt+skRr+gi+KKAeE+SvLCda+ AUR62007715-RA 9 KRIENPSNRQVTYSKRRHGIFKKAEEISVLCDAK 42 79******************************96 PP
2	K-box	63.6	7.3e-22	40	95	13	68
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 +a++l++e++++kke++n+q e+Rhl+Ged+ L + eLqqLe++Le++++++R+k AUR62007715-RA 40 DAKNLSNEIERIKKENDNMQIELRHLKGEDIAALPYTELQQLEDALEHGISSVRDK 95 3589**************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence
MGRGKIEIKR IENPSNRQVT YSKRRHGIFK KAEEISVLCD AKNLSNEIER IKKENDNMQI 60 ELRHLKGEDI AALPYTELQQ LEDALEHGIS SVRDKEASN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	4e-36	MIKC_MADS family protein