PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62007716-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22491.7 Da    PI: 8.6233
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62007716-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.84.5e-26959150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                    krien +nrqvtfskRrngi+KKA+E+ vLCda+v+v+if++ +gk+y+y 
  AUR62007716-RA  9 KRIENATNRQVTFSKRRNGIIKKAKEITVLCDAKVSVVIFANnNGKMYDYH 59
                    79*************************************996269***996 PP
2K-box67.16.1e-2372152181
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                     yq+ sg++l++ak+e+l++e++++kke++ ++ e+Rhl Ged+ sL++ +L +Le++L+ ++ +i ++K  + +    + +
  AUR62007716-RA  72 YQEISGVKLWDAKHENLKNEIDRVKKENDDMRIELRHLNGEDIASLQYPDLIRLEEALDIGIARINDRKAMYCILVHTQNK 152
                     89999****************************************************************765443333333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MGRGKIEIKR IENATNRQVT FSKRRNGIIK KAKEITVLCD AKVSVVIFAN NNGKMYDYHS  60
PSTTVEHILD KYQEISGVKL WDAKHENLKN EIDRVKKEND DMRIELRHLN GEDIASLQYP  120
DLIRLEEALD IGIARINDRK AMYCILVHTQ NKQENEMIDG GVRHAPQERD YHYQIPYGYR  180
LQPMQPNLQE RM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-71MIKC_MADS family protein