PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62007887-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 29059 Da    PI: 9.7908
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62007887-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ienk+nrqvtfskRr g+ KKA+E+SvLCd eva+i+fs++gkl+eyss
  AUR62007887-RA  9 KKIENKINRQVTFSKRRSGLAKKAHEISVLCDSEVALIVFSHRGKLFEYSS 59
                    68***********************************************96 PP
2K-box100.72e-338817414100
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + +++ ++akLk+++e Lqr++Rh+lG++L+sL++keLq+LeqqL+++lk++RskKn+l++e+i+e qkke+++q +n++L+kk++e
  AUR62007887-RA  88 QVNWTFDFAKLKAKLELLQRNHRHYLGQELDSLNVKELQSLEQQLDTALKNVRSKKNQLMHESISEFQKKERAIQVHNNMLSKKIKE 174
                     568999******************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MGRGRVQLKK IENKINRQVT FSKRRSGLAK KAHEISVLCD SEVALIVFSH RGKLFEYSSD  60
SSMENILERY ERYSYAERRL TSNDPDLQVN WTFDFAKLKA KLELLQRNHR HYLGQELDSL  120
NVKELQSLEQ QLDTALKNVR SKKNQLMHES ISEFQKKERA IQVHNNMLSK KIKEKGKNMA  180
QVQQLQWQEQ QSPPRNHQEG PSAASNFLLP PPPPSLNMGG AYQGELGGEG RRNDLDLTLE  240
PIYSCQMGCF TN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-89MIKC_MADS family protein