PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62007891-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family YABBY
Protein Properties Length: 166aa    MW: 18578.5 Da    PI: 8.5028
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62007891-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY142.54.7e-44191666159
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                      +e++Cyv+CnfCnt+lav +P + l+ ++tv+CGhC+++  ++ +   q +   +++  ++     + l++ +      ++ ++s+++s++s +
  AUR62007891-RA  19 PPEHLCYVRCNFCNTVLAVVIPCKRLLDTITVKCGHCSNVSFLSTRPPLQGQCLDHQITLQGF----NFLEKPGG--FCSTIDHHSNKKSEPSPS 107
                     68************************************9977666665555444443333322....22222222..234455666677777888 PP

           YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                     +s+  +e v+  p v +PPek+ r Psaynrf+keeiqrika+nP+i hreafs+aakn
  AUR62007891-RA 108 MSSTLTEPVSPRPFVCKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKN 166
                     88888888887789********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MMNTNMMEDK VGSELAPPPP EHLCYVRCNF CNTVLAVVIP CKRLLDTITV KCGHCSNVSF  60
LSTRPPLQGQ CLDHQITLQG FNFLEKPGGF CSTIDHHSNK KSEPSPSMSS TLTEPVSPRP  120
FVCKPPEKKH RLPSAYNRFM KEEIQRIKAA NPEIPHREAF STAAKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-52YABBY family protein