PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008157-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 280aa MW: 31497.9 Da PI: 5.1911

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008157-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g W++eEde+l++ ++++G g+W+++++ AUR62008157-RA 14 KGLWSPEEDEKLYNHITRFGVGCWSSVPKLAD 45 678************************99876 PP
2	Myb_DNA-binding	50.1	6.3e-16	48	92	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ AUR62008157-RA 48 RGMFSQEEEHLILNLHQILGNR-WAQIASQLP-GRTDNEIKNFWNSC 92 788*****************.*****.*********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MGRHSCCAKQ KLKKGLWSPE EDEKLYNHIT RFGVGCWSSV PKLADLKRGM FSQEEEHLIL 60 NLHQILGNRW AQIASQLPGR TDNEIKNFWN SCLKKKLMKQ GIDPQTHEPL STQMQSSNNM 120 STSSNGFRNT AENQKIARAV KMEQSYPFCN TAEVTNTSAT QSCFNENLET ENLGSESVVF 180 NEGKECSSSS SNNNNNIMTN SDNSARFSWE NSTNDQQNKF DQSEIFQFPV NFGGLIKMEA 240 VSHDQTSPWE EDPLKSLSMP EDLVTTAAGN LDYFLQQIS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	1e-58	MYB family protein