PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008522-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 566aa MW: 64449.1 Da PI: 5.028

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008522-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	536	556	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 +C++Cg+ F ++s L++H++ AUR62008522-RA 536 VCEKCGEEFESRSKLHKHLSE 556 6*****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MAATEKRCYY EVLGLQQSCT QDEIRSAYKK LALQRHPDKL IQSGIASADA TAAFQELVRA 60 YEILSDPKER SWYDSHRSQI LFSSNSGSDS NSNSDSPFPD LFSYFSPSCY TDYTNPKTGF 120 YKVYGDVFDR IYAHEIKYCR LMGLNLGLVK EAPLLGDLKC DYSQVNAFYG YWLGFSTVMD 180 FGWVDKYDAA AGENRKSRRV MEEENKKVRK KAKREFNETV RGLAEFVKKR DKREPDWAKV 240 EEVELEDLEE DGKGEEERKE LYCAACGKKF KSDKQWKNHE QSKKHKEKVA YLRKSFIEED 300 DFEDVEQVDV DGGIQHETVE PVAGNVDDNN DVAGNVDSEK SENVVVDDGF VSAEDDVDEL 360 EERFQESVGF EEGKSRYELP SDKEDGIGND ELNDIRQCPG GSDDESVDLE AMISGRRNKK 420 HVTSKNESFE SNNVQSEDDI EPMEYNNKKV KKKSRRAKKE KDNVPVMENN GLSVSDTSNN 480 GDDDQVDHDP QTSTKAGKKS FGRKEKGTIK RDTEAKPKNP CKGRKQKEKS KNHEPVCEKC 540 GEEFESRSKL HKHLSETGHA TVKIR*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MAATEKRCYY EVLGLQQSCT QDEIRSAYKK LALQRHPDKL IQSGIASADA TAAFQELVRA  60
YEILSDPKER SWYDSHRSQI LFSSNSGSDS NSNSDSPFPD LFSYFSPSCY TDYTNPKTGF  120
YKVYGDVFDR IYAHEIKYCR LMGLNLGLVK EAPLLGDLKC DYSQVNAFYG YWLGFSTVMD  180
FGWVDKYDAA AGENRKSRRV MEEENKKVRK KAKREFNETV RGLAEFVKKR DKREPDWAKV  240
EEVELEDLEE DGKGEEERKE LYCAACGKKF KSDKQWKNHE QSKKHKEKVA YLRKSFIEED  300
DFEDVEQVDV DGGIQHETVE PVAGNVDDNN DVAGNVDSEK SENVVVDDGF VSAEDDVDEL  360
EERFQESVGF EEGKSRYELP SDKEDGIGND ELNDIRQCPG GSDDESVDLE AMISGRRNKK  420
HVTSKNESFE SNNVQSEDDI EPMEYNNKKV KKKSRRAKKE KDNVPVMENN GLSVSDTSNN  480
GDDDQVDHDP QTSTKAGKKS FGRKEKGTIK RDTEAKPKNP CKGRKQKEKS KNHEPVCEKC  540
GEEFESRSKL HKHLSETGHA TVKIR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	232	RKSRRVMEEENKKVRKKAKREFNETVRGLAEFVKKRDK
2	206	214	KKVRKKAKR
3	229	266	RKSRRVMEEENKKVRKKAKREFNETVRGLAEFVKKRDK
4	416	453	RKSRRVMEEENKKVRKKAKREFNETVRGLAEFVKKRDK
5	448	456	KKVRKKAKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-117	C2H2 family protein