PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62008578-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 399aa MW: 44531.4 Da PI: 6.2824

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62008578-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	4e-07	21	63	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++r C+ ++e + ++C+ ++ lC +C e H+ Ht AUR62008578-RA 21 QKRLCDFCSESVALIYCRADSAKLCLSCDREVHSTnqlftkHT 63 7899****99*******************6677777777 PP
2	zf-B_box	29	2.1e-09	66	99	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgH 37 + C+ +++ ++++fC++ ++ lC++C +e H++H AUR62008578-RA 66 QLCDACDSSPASIFCHTEHSVLCQNCDFERHSRH 99 68*****************************996 PP
3	CCT	62.3	1.5e-21	349	391	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ al+RYkeK++tR+FeK+irYesRK AesR R+KGrF+k AUR62008578-RA 349 RDTALSRYKEKKRTRRFEKHIRYESRKLQAESRVRIKGRFAKV 391 899**************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MPNSPSNHHT NPENPQIPNT QKRLCDFCSE SVALIYCRAD SAKLCLSCDR EVHSTNQLFT 60 KHTRFQLCDA CDSSPASIFC HTEHSVLCQN CDFERHSRHG SSLDHDRRPL EGFSGCPCVS 120 ELSVAIGFEG FDSKSLILGG ESGVNKGFNG GLFDGFDEGN DGFSDLFGWD VPTMVSLDDL 180 IVSTDKCHSF QATVVPPLPK DRNLSCGQHK HEILHQLRAL AKLEPVIKQD VNPLYMHQFV 240 ADEDERDSML QHKIQAHQCN EEHSTFQGNE ASPYNWCYDT GEDANDIYFS SALSGSHNED 300 SVPNLGTPSG ICSSANLITN GCNSQNPIKN ESVGIPQNVS SREITSVDRD TALSRYKEKK 360 RTRRFEKHIR YESRKLQAES RVRIKGRFAK VDNRMNQS*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MPNSPSNHHT NPENPQIPNT QKRLCDFCSE SVALIYCRAD SAKLCLSCDR EVHSTNQLFT  60
KHTRFQLCDA CDSSPASIFC HTEHSVLCQN CDFERHSRHG SSLDHDRRPL EGFSGCPCVS  120
ELSVAIGFEG FDSKSLILGG ESGVNKGFNG GLFDGFDEGN DGFSDLFGWD VPTMVSLDDL  180
IVSTDKCHSF QATVVPPLPK DRNLSCGQHK HEILHQLRAL AKLEPVIKQD VNPLYMHQFV  240
ADEDERDSML QHKIQAHQCN EEHSTFQGNE ASPYNWCYDT GEDANDIYFS SALSGSHNED  300
SVPNLGTPSG ICSSANLITN GCNSQNPIKN ESVGIPQNVS SREITSVDRD TALSRYKEKK  360
RTRRFEKHIR YESRKLQAES RVRIKGRFAK VDNRMNQS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	3e-85	CO-like family protein