PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009136-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 186aa    MW: 20630.8 Da    PI: 8.8091
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009136-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.62.6e-35451441100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaC+++rrkCa+dC+lapyfpa+++++f n+ klFG++n++k+l+++ +  r+dam++l y A+ara+dPv G+++++++l  +++  +++l+
  AUR62009136-RA  45 ACAACRFQRRKCAEDCPLAPYFPAHKHQQFINAYKLFGVNNIVKTLNSVAPWLRDDAMTALKYTADARAKDPVGGCTRILKSLYDRIAFYNEQLE 139
                     7******************************************************************************************9999 PP

          DUF260  96 llkee 100
                     ++ ++
  AUR62009136-RA 140 EVLAQ 144
                     87665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MPPKSIQSTT PSPPTLTSKV TVAFQNPTKS SVENSPNPIP PPSNACAACR FQRRKCAEDC  60
PLAPYFPAHK HQQFINAYKL FGVNNIVKTL NSVAPWLRDD AMTALKYTAD ARAKDPVGGC  120
TRILKSLYDR IAFYNEQLEE VLAQIAAVRA INDDLNLKPF VDDQVQVREE LPVQIRFVLF  180
IALCK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.16e-36LBD family protein