PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009137-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 230aa    MW: 25293.4 Da    PI: 4.426
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009137-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26024.67.2e-08749139
          DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqp....kkfanvhklFGa 39
                    +Ca C + rr+C  +C l p+fp++      k+   + k+FGa
  AUR62009137-RA  7 SCAFCTLRRRRCDGKCLLKPHFPQDGGngkeKQASKILKVFGA 49
                    6**********************96532333788888999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MVVRRSSCAF CTLRRRRCDG KCLLKPHFPQ DGGNGKEKQA SKILKVFGAD ARVRDLVGGC  60
VRALENLAGV LAFYSDQLHV VTNMLSYIKL NPGEYPTPFL VGDDLAQSSQ LLQPDDPFLQ  120
LLSDQIPNGE VSNEIEIGQA QATFDPPPYR VGDNQAQAPQ EFFHFLPVPQ LDLSGQIPND  180
GVDNQIDIGL EPKPNDVDDQ IAVGLEPASN DGVDDQIEQE PEPKRRRFI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.16e-08LBD family protein