PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009138-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 192aa    MW: 21211.3 Da    PI: 5.9062
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009138-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26081.41.4e-2514110298
          DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                     Ca+C++++  C ++C lapyfpae++++  n+ k+F+ + ++ +lk+++ +++++a++ ++++Aear+rdPv G++ +il+l+++++  +++l +
  AUR62009138-RA  14 CAVCQIQGLICDANCLLAPYFPAEKEQEATNILKVFSYDYITDILKDIHSTQHDIAIKVIAFNAEARLRDPVGGCMPTILTLRRNIAFYHNQLRE 108
                     *****************************************************************************************999988 PP

          DUF260  97 lk 98 
                     ++
  AUR62009138-RA 109 VH 110
                     76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MMNTPKSVAQ RRGCAVCQIQ GLICDANCLL APYFPAEKEQ EATNILKVFS YDYITDILKD  60
IHSTQHDIAI KVIAFNAEAR LRDPVGGCMP TILTLRRNIA FYHNQLREVH YLLSYIKFLK  120
YGTPINPVNP TPSLVGDDHI QASLGDHIPY GGGDDQIEIG QAQAMVDPPP SYRVGDQAQA  180
SQMLIDFLPL P*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.24e-19LBD family protein