PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009310-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CPP

Protein Properties

Length: 575aa MW: 62319.1 Da PI: 8.7409

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009310-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.8	6.1e-15	98	137	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ ++ AUR62009310-RA 98 KQKQCNCKNSRCLKLYCECFASGIYCDG-CNCVNCHNNVDH 137 89************************.******9875 PP
2	TCR	51.5	1.9e-16	182	221	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgCnCkks ClkkYCeCf+a+ Cs++CkC dCkN e AUR62009310-RA 182 KHNKGCNCKKSGCLKKYCECFQANILCSDNCKCIDCKNFE 221 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MERGETAAVT AAAPSSSSSE FAPKKLARQL DFTPNSLAPV QKSPVRQVPV HQSPVQVVQR 60 AAHPIPRPPA LAATVKPETQ SPQPQATVPV VKDGTPKKQK QCNCKNSRCL KLYCECFASG 120 IYCDGCNCVN CHNNVDHESA RQEAIGATLE RNPNAFRPKI ASSPHGSRMN KPETGPAQLV 180 GKHNKGCNCK KSGCLKKYCE CFQANILCSD NCKCIDCKNF EGSEERRALF HGSNYNTMIY 240 QAANAAINGA IGSSGPSGYG NSPGSRKRRS QELFIGMYNN QPFYRNTHYM QGNHVKSAPP 300 THPSEPPATR GTSSQAASKI TYRSPLAGVI QPQDVKELCS LLVIVSKEAA KPFVDKSSNI 360 DNQEKDESRS RGSFETKAKV NDQKEYNMEK GALQNHSTDE QAVRIRPESS GLDESDALHG 420 RPASPGTMAL MCYEQESVLM EESSRGPTVN NQNTAPETSS EPKVTDCFVK QERAVLTNFR 480 DFLNRLITCG SIKETMCSSQ ARNEAGIQGP SVKTDAFYNG HLSNGILKPF ASMANHTPAT 540 RTGGVVFGST NAFAQHMGLP NENGMLKPKT EKTV*

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MERGETAAVT AAAPSSSSSE FAPKKLARQL DFTPNSLAPV QKSPVRQVPV HQSPVQVVQR  60
AAHPIPRPPA LAATVKPETQ SPQPQATVPV VKDGTPKKQK QCNCKNSRCL KLYCECFASG  120
IYCDGCNCVN CHNNVDHESA RQEAIGATLE RNPNAFRPKI ASSPHGSRMN KPETGPAQLV  180
GKHNKGCNCK KSGCLKKYCE CFQANILCSD NCKCIDCKNF EGSEERRALF HGSNYNTMIY  240
QAANAAINGA IGSSGPSGYG NSPGSRKRRS QELFIGMYNN QPFYRNTHYM QGNHVKSAPP  300
THPSEPPATR GTSSQAASKI TYRSPLAGVI QPQDVKELCS LLVIVSKEAA KPFVDKSSNI  360
DNQEKDESRS RGSFETKAKV NDQKEYNMEK GALQNHSTDE QAVRIRPESS GLDESDALHG  420
RPASPGTMAL MCYEQESVLM EESSRGPTVN NQNTAPETSS EPKVTDCFVK QERAVLTNFR  480
DFLNRLITCG SIKETMCSSQ ARNEAGIQGP SVKTDAFYNG HLSNGILKPF ASMANHTPAT  540
RTGGVVFGST NAFAQHMGLP NENGMLKPKT EKTV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	270	SRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-114	CPP family protein