PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009424-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 29288.5 Da    PI: 8.4714
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009424-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.7e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRr g+lKKA+EL vLCdaeva+iifsstg+l+e+ss
  AUR62009424-RA  9 KKIENANSRQVTFSKRRSGLLKKAHELAVLCDAEVALIIFSSTGRLFEFSS 59
                    68***********************************************96 PP
2K-box70.84.2e-249017218100
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +e++ Lk+ei+ Lq +q +llG+dL+ Ls+keLqqLe+qL++sl +i++kK++ll++q+e+++ +e+++  en++Lr++++e
  AUR62009424-RA  90 LKEIDSLKDEISRLQVKQMRLLGKDLSGLSMKELQQLEKQLNESLLSIKAKKDQLLMDQLEHSRVQEHRAMLENESLRRQIAE 172
                     479*****************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MGRGKIEIKK IENANSRQVT FSKRRSGLLK KAHELAVLCD AEVALIIFSS TGRLFEFSSS  60
SMKRTIARYK NALETSDVSV GKPKLQIEDL KEIDSLKDEI SRLQVKQMRL LGKDLSGLSM  120
KELQQLEKQL NESLLSIKAK KDQLLMDQLE HSRVQEHRAM LENESLRRQI AELRGFHTPS  180
DRPEPMYLEY YPIAAKVSSE TNATSGSDAI CNSEYDKTDT DVTLHLGHHV TAFERGKQQR  240
ATVEVQQLLL DHLSLPHC*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-74MIKC_MADS family protein