PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62009485-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 218aa MW: 25177.8 Da PI: 9.6109

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62009485-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.6e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s AUR62009485-RA 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	100.2	2.8e-33	82	172	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ es+++e+ kLk+++e+Lqr+qR+llGedL++L++keL qLe+qLe+slk+iRs+K++ +++q+ +lq+ke++l e+nk+L+++l+ AUR62009485-RA 82 KPSKELESSYREYLKLKARYESLQRTQRNLLGEDLGPLNVKELDQLERQLETSLKQIRSTKTQSMVDQLTDLQHKEHALMEANKSLKTELD 172 4578899********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG 60 PSMLKTLERY QKCSYGGVEV NKPSKELESS YREYLKLKAR YESLQRTQRN LLGEDLGPLN 120 VKELDQLERQ LETSLKQIRS TKTQSMVDQL TDLQHKEHAL MEANKSLKTE LDRITIKDAP 180 YRQSWDGTDQ NVHYGQQHAQ SQGLLNFQPL GCNPTLQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-111	MIKC_MADS family protein