PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009622-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 250aa    MW: 26696.9 Da    PI: 6.8539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009622-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001199121123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  AUR62009622-RA  99 HSCKICGVEFPTGQALGGHMRRH 121
                     79********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MNTITMVNRG GAGEIETSAM ANCLMLLSAH SAAVNSVGGG NSDNENGVGR MFACKTCDRK  60
FSSFQALGGH RASHKKIKSP NSGDFSDDMT SFPAKPKAHS CKICGVEFPT GQALGGHMRR  120
HRETLSAVGG GSAAAAAALS SVTTEGSIGN SDGNNGGEKK RKINNNDVVS EFPVMMKSGS  180
CKRVCLDLDL NLWKKKKENV AAVINNDDYE IEEGEIVEQH DEKSGDVKNN VEEEKDFLKL  240
ELRQPINCW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159197KKRKINNNDVVSEFPVMMKSGSCKRVCLDLDLNLWKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.15e-30C2H2 family protein