PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62009930-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Trihelix
Protein Properties Length: 243aa    MW: 26747.6 Da    PI: 9.6837
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62009930-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix452.8e-1451135486
        trihelix   4 kqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     ++ + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ ++ +qCk++++ ++k+yk +k+   ++ ++ s ++p+fd+l+
  AUR62009930-RA  51 QRATSVLIDAWGERYMELSRGNLKQKHWKEVADIVssreDFTKVPKTDIQCKNRIDTVKKKYKVEKQKVVSG-CGPS-RWPFFDRLD 135
                     67899******************************85444445667889**********************8.6665.8******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MDEDDDTRSH TSIGSEPPSP PSGQITVTVA AAPPSSTPSS STPQPPPQLS QRATSVLIDA  60
WGERYMELSR GNLKQKHWKE VADIVSSRED FTKVPKTDIQ CKNRIDTVKK KYKVEKQKVV  120
SGCGPSRWPF FDRLDRLIGP AAATPNSNTV MGLGPLSTAT VSTGGPLPHG KAVPVGIPVW  180
GSSVRDLTRA IMKFGEAYEA AESAKLQHIV EMEMQRMKFA KELELQRMKF MMKTQLELSQ  240
LNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-44Trihelix family protein