PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62010506-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 418aa MW: 47832.5 Da PI: 8.1286

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62010506-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C Cg+ F+ ++ L H ++H AUR62010506-RA 167 YVCRVCGRKFRMNEKLIEHFKVH 189 9******************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
LEDSWRATVG WVIQEKEAIT TIFASGGYGY SDGTPTHLTR WRKVTVLPDS SVFVNAFRQE 60 ERANREIKQM IREIKLLIDN SLVKLPQSKI GIFWDLENKP PNSVSPFEAA IKLKRAVSSF 120 GIVRYMVAYA NQHAFSYVPS AVRELRNERK VLNRLENKGV IRCIEPYVCR VCGRKFRMNE 180 KLIEHFKVHE REHQKRLKQI ESAKGKKRVN LVGKYAMKME KYKNAAREIL TPKVGYGLGD 240 DLKRAGFWVR MVSDEPQAAD VALKSHIVDM MDHRRIECLV IVSDDSDFLG VLKEAKERCL 300 KTVVVGDNHD GVLKRNADAS FSWRDILVGK AKTQAVSVVG QWKDRDVLKR LEWSYNPDLE 360 RGACKGSNAY DFENVQLEEE DTDDSIEDDH DPLLHNDDRP WWELDPVDDG ASSNPLT*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

LEDSWRATVG WVIQEKEAIT TIFASGGYGY SDGTPTHLTR WRKVTVLPDS SVFVNAFRQE  60
ERANREIKQM IREIKLLIDN SLVKLPQSKI GIFWDLENKP PNSVSPFEAA IKLKRAVSSF  120
GIVRYMVAYA NQHAFSYVPS AVRELRNERK VLNRLENKGV IRCIEPYVCR VCGRKFRMNE  180
KLIEHFKVHE REHQKRLKQI ESAKGKKRVN LVGKYAMKME KYKNAAREIL TPKVGYGLGD  240
DLKRAGFWVR MVSDEPQAAD VALKSHIVDM MDHRRIECLV IVSDDSDFLG VLKEAKERCL  300
KTVVVGDNHD GVLKRNADAS FSWRDILVGK AKTQAVSVVG QWKDRDVLKR LEWSYNPDLE  360
RGACKGSNAY DFENVQLEEE DTDDSIEDDH DPLLHNDDRP WWELDPVDDG ASSNPLT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-136	C2H2 family protein