PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62010573-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 166aa MW: 18915.6 Da PI: 9.1535

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62010573-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.4	2.9e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs+tgklye++s AUR62010573-RA 9 KRIENDSSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPTGKLYEFAS 59 79***********************************************86 PP
2	K-box	57.8	4.8e-20	59	123	34	98
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + R+llG++Le +s+ eLq+Le+qL+ksl++iR+kKn l++e+i++l + ek l +en +L++kl AUR62010573-RA 59 SSRKLLGDGLEACSIDELQELEKQLDKSLSNIRAKKNALFREKIDKLYEEEKLLLKENARLKEKL 123 56************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MVRGKTQMKR IENDSSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP TGKLYEFASS 60 RKLLGDGLEA CSIDELQELE KQLDKSLSNI RAKKNALFRE KIDKLYEEEK LLLKENARLK 120 EKLHVSSPDS QRSRQTADDQ QNSAQDVETE LFIGLPESRN TRLLQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-46	MIKC_MADS family protein