PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62010628-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 444aa MW: 49120.2 Da PI: 8.195

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62010628-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.2e-18	25	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ + + v+++G ++W+ Ia++++ gR +kqc++rw+++l AUR62010628-RA 25 KGPWTKEEDDCIMEMVQMHGCKSWSVIAKRLP-GRIGKQCRERWHNHL 71 79****************************.***********97 PP
2	Myb_DNA-binding	55.4	1.4e-17	77	120	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE+ ll +++++G++ W+ Iar ++ gRt++ +k++w++ AUR62010628-RA 77 KDAWTEEEESLLTYYHQRYGNK-WAEIARFLP-GRTDNAIKNHWNS 120 689*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
EHFSGRTDVQ CLHRWQKVLN PELVKGPWTK EEDDCIMEMV QMHGCKSWSV IAKRLPGRIG 60 KQCRERWHNH LDPAIKKDAW TEEEESLLTY YHQRYGNKWA EIARFLPGRT DNAIKNHWNS 120 SLKKKLDARS SHGSTQSINK TTFETNCYEG KLDLCRVKAA ANVYEDSCTA SIYGTETCST 180 ELALGNTPGN SYRSEIRLDR PSRMLFDEKD APLGADLQLS SIATVGSRLN FPSTNYKATP 240 LTMLSLESPK RPRSGSKTVD QVFRSLDKPF LSLGMSGFSE DDAQGKKKNK VNGISTDSED 300 TSYGSLCYEP PGVRISETGQ VYGVNYVENN DAQTNSPLYF STPPSHVYTP TSSGSPESIL 360 RNSAMSFSMP SIIRKKSSSK LRNSVEKGMG MQDVRKAETS AAPKPVERCL ELSFDMEADV 420 GGVKCGASVA TPGDVGLKTM SIS*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

EHFSGRTDVQ CLHRWQKVLN PELVKGPWTK EEDDCIMEMV QMHGCKSWSV IAKRLPGRIG  60
KQCRERWHNH LDPAIKKDAW TEEEESLLTY YHQRYGNKWA EIARFLPGRT DNAIKNHWNS  120
SLKKKLDARS SHGSTQSINK TTFETNCYEG KLDLCRVKAA ANVYEDSCTA SIYGTETCST  180
ELALGNTPGN SYRSEIRLDR PSRMLFDEKD APLGADLQLS SIATVGSRLN FPSTNYKATP  240
LTMLSLESPK RPRSGSKTVD QVFRSLDKPF LSLGMSGFSE DDAQGKKKNK VNGISTDSED  300
TSYGSLCYEP PGVRISETGQ VYGVNYVENN DAQTNSPLYF STPPSHVYTP TSSGSPESIL  360
RNSAMSFSMP SIIRKKSSSK LRNSVEKGMG MQDVRKAETS AAPKPVERCL ELSFDMEADV  420
GGVKCGASVA TPGDVGLKTM SIS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	4e-68	MYB family protein