PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62010868-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ARF

Protein Properties

Length: 623aa MW: 69312.2 Da PI: 5.5926

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62010868-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.2	6.5e-23	115	215	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvlt sd++++g +++ +k+a+e+ + ++ +++l ed++g W++k+i+r++++r++lt+GW++Fv ++++ +gD++vF + + AUR62010868-RA 115 FSKVLTASDTSTHGGFSVLRKHANEClppldmtQ--QTPTQELAAEDLHGYPWRFKHIFRGQPRRHLLTTGWSHFVTSKRIVAGDSFVFL--RGE 205 88**************************9643..445569********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r AUR62010868-RA 206 KGELRVGVRR 215 9*****98 PP
2	Auxin_resp	99.5	4.5e-33	241	320	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v ++k+++++ + + vGmRfkm+fe++d +err++Gt+vgv++l+p +W++SkWrsLk AUR62010868-RA 241 ASHAVTTNTYFVVYYKPRM--SQFIVGLNKYLQSVANDYKVGMRFKMKFEGDDTPERRFTGTIVGVEELSP-QWKDSKWRSLK 320 689*************7..9*********************************************.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MANSMAFGQP NLSPGVRDSG GGDVLYPELW RACAGPLVEI PRLEASTNEE LNQRIHMFNL 60 NSKILCRVLN IHLLAEKETD EVYAQITLLP EADQTEPLTA DEYPSEPRRP TIRSFSKVLT 120 ASDTSTHGGF SVLRKHANEC LPPLDMTQQT PTQELAAEDL HGYPWRFKHI FRGQPRRHLL 180 TTGWSHFVTS KRIVAGDSFV FLRGEKGELR VGVRRVARQQ SSMPSSVISS QSMHLGVLAT 240 ASHAVTTNTY FVVYYKPRMS QFIVGLNKYL QSVANDYKVG MRFKMKFEGD DTPERRFTGT 300 IVGVEELSPQ WKDSKWRSLK VQWDEPTSIP RSDRVSPWEI EPFGYPAASD VADPVVKNKK 360 PRPSVEIPGH ASMSVNDSTP WNPINDIAQA EIEDCKTATA WSVFSGYGTP QSAKQTGDLT 420 EIGKKTETTS SYRLFGIDLM KPSTPTTVEE DFVQEPNVNG VSKEEQGRSL DSAAESEQKS 480 DLSKISQEKK QTLLLASSKD MPSKQGSSTR SRTKVQMQGV AVGRAVDLTT LENYDQLIDE 540 LEELFDIKGE LRPRVKWEIV FTDDEGDMML VGDDPWLEFC SMAKKLYICS SQEVKKMSAG 600 CKLPSSSLEG DGTVVSMESS GN*

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MANSMAFGQP NLSPGVRDSG GGDVLYPELW RACAGPLVEI PRLEASTNEE LNQRIHMFNL  60
NSKILCRVLN IHLLAEKETD EVYAQITLLP EADQTEPLTA DEYPSEPRRP TIRSFSKVLT  120
ASDTSTHGGF SVLRKHANEC LPPLDMTQQT PTQELAAEDL HGYPWRFKHI FRGQPRRHLL  180
TTGWSHFVTS KRIVAGDSFV FLRGEKGELR VGVRRVARQQ SSMPSSVISS QSMHLGVLAT  240
ASHAVTTNTY FVVYYKPRMS QFIVGLNKYL QSVANDYKVG MRFKMKFEGD DTPERRFTGT  300
IVGVEELSPQ WKDSKWRSLK VQWDEPTSIP RSDRVSPWEI EPFGYPAASD VADPVVKNKK  360
PRPSVEIPGH ASMSVNDSTP WNPINDIAQA EIEDCKTATA WSVFSGYGTP QSAKQTGDLT  420
EIGKKTETTS SYRLFGIDLM KPSTPTTVEE DFVQEPNVNG VSKEEQGRSL DSAAESEQKS  480
DLSKISQEKK QTLLLASSKD MPSKQGSSTR SRTKVQMQGV AVGRAVDLTT LENYDQLIDE  540
LEELFDIKGE LRPRVKWEIV FTDDEGDMML VGDDPWLEFC SMAKKLYICS SQEVKKMSAG  600
CKLPSSSLEG DGTVVSMESS GN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein