PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62011149-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family YABBY
Protein Properties Length: 210aa    MW: 23511.5 Da    PI: 8.2267
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62011149-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY220.55e-68151826170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslk.eelleelkveeenlksnvekeesastsvsse 99 
                     sseq+Cy+ Cn+Cn +lavsvP + lf +vtvrCGhCt+l svn+a a + l+a+ + +++ + ++  ++ ++ e  ++   ++++++ t+++++
  AUR62011149-RA  15 SSEQLCYIPCNYCNIVLAVSVPCNNLFDIVTVRCGHCTNLWSVNMAAAFHSLSASWQQHQQQNfHQAPNNGNMGEYRIDNLGSSSKCNYTNKAAT 109
                     79*********************************************999998876544444404455666777888888888888888887777 PP

           YABBY 100 kl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     ++  s   ++++++   ++rPPekrqrvPs yn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  AUR62011149-RA 110 TMriSPPISNNSAEERIINRPPEKRQRVPSVYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 182
                     775555666666666679*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSSCMDQAA VAPPSSEQLC YIPCNYCNIV LAVSVPCNNL FDIVTVRCGH CTNLWSVNMA  60
AAFHSLSASW QQHQQQNFHQ APNNGNMGEY RIDNLGSSSK CNYTNKAATT MRISPPISNN  120
SAEERIINRP PEKRQRVPSV YNQFIKEEIQ RIKANNPDIS HREAFSTAAK NWAHFPHIHF  180
GLMLETNNQP KLDEGSQKHL MPRTALLNN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.17e-79YABBY family protein