PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62011628-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 332aa MW: 37704.8 Da PI: 7.4088

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62011628-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.1	9.6e-18	96	180	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ aL++a e+ rl+r++l+ +W+ev++k+ +e+ +er+ qC+++++ l+k+ykk++++ + s++s +++++++++ AUR62011628-RA 96 WTEKETFALLDAWGERFLRLGRKSLRSDDWQEVAEKVsQETNVERTDAQCRNRLDTLKKKYKKENTRLTAGGSGVS-QWVFYRRMD 180 ***********************************88999************************976666.9****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MDDDKDNGSR YIPKAYGLND QQEYGSSLRP KGSGFSDRFN GKAEDISNGM PRKKRRLKTI 60 ISNYEFAPRV PTPTVQKATL LQAQPSSSGQ NSVGDWTEKE TFALLDAWGE RFLRLGRKSL 120 RSDDWQEVAE KVSQETNVER TDAQCRNRLD TLKKKYKKEN TRLTAGGSGV SQWVFYRRMD 180 MLLSSPHQQT GLSCGIDSGE YVFMNSNVYL NRANGLDEMR DSPGNSDYLR DEDGNDSDGL 240 PPKGKKNKGR RVDGSSVQLL ADSIEKFSEI YEKIESNKRK QMTELEKMRM DFHRQLETQR 300 REILERAQAE IAKIRQGDDD ENDLSAENLS G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	57	PRKKRRL
2	53	58	KKRRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-77	Trihelix family protein