PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62011898-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 194aa MW: 21132.2 Da PI: 8.2892

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62011898-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.8	1.2e-40	8	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll +lp ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l AUR62011898-RA 8 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHLPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQL 102 7***********************99*************************************************************** PP DUF260 95 allkeel 101 +++k++l AUR62011898-RA 103 VQVKAQL 109 99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MAAGAGSPCG ACKFLRRKCA SDCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHLPVH 60 DRCEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVAYLQA QLVQVKAQLA NNLVDNRNSM 120 ENQWTTAATT AIEGNNNSID QQNVSRDHQG MMIMAMQDYG GAISAKSEGI IGKKRSHNDM 180 GELQELALRM MRN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	177	KKRSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	2e-59	LBD family protein