PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62012040-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 248aa MW: 26287.6 Da PI: 9.7409

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62012040-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.7e-07	34	58	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H AUR62012040-RA 34 KSKPCTKFFSTSGCPFGENCHFLHH 58 7789********************6 PP
2	zf-CCCH	25.6	2.1e-08	97	120	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt+lC+ f CkyGd+C+FaH AUR62012040-RA 97 KTRLCNKFNSAEGCKYGDKCHFAH 120 8*********************** PP
3	zf-CCCH	33.6	6.6e-11	214	238	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+t+lC +f + G C +GdrC+FaHg AUR62012040-RA 214 YRTKLCENFTK-GSCTFGDRCHFAHG 238 89*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MDGRKRGRNN DAGAVHSNGG FKKHKQETDG IGSKSKPCTK FFSTSGCPFG ENCHFLHHVS 60 GGYNAVAQLM NLPPMSRNAP PPPPPPQSHN GSAPAAKTRL CNKFNSAEGC KYGDKCHFAH 120 ATAKISVDAS LAGAIIGKSG VNSKQICRQT GVKLSIRDHD SDSNKRNIEL EGTFDQIKMA 180 SEMVHDLVAS VSANAPFNKA PVGPAPHGPT STNYRTKLCE NFTKGSCTFG DRCHFAHGAA 240 ELRKSGV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-85	C3H family protein