PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62012274-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Trihelix
Protein Properties Length: 253aa    MW: 28542.8 Da    PI: 10.3099
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62012274-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.97.5e-151394186
        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergfer..spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    +W+++ + +Liea  e+  r++rg+l++++W ev++++ + g++r  + +qCk++++ ++k+yk +k  +        st+++f++l+
  AUR62012274-RA 13 CWSEESTAVLIEAWGERYLRSNRGNLRQNDWNEVADAVNSAGITRrkTDVQCKNRIDTIKKKYKVEKVKSPP------STWRFFERLD 94
                    7*****************************************97766999**************99887775......58****9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MAAPKQSGGR DDCWSEESTA VLIEAWGERY LRSNRGNLRQ NDWNEVADAV NSAGITRRKT  60
DVQCKNRIDT IKKKYKVEKV KSPPSTWRFF ERLDFLIGNV TSSAVQARNY SRDHTSFSGL  120
KMKDSFLAQV VFRSITLLLL CDALYMALEG WKFCGNWFRR LRSVPREGIK PITQHVMGQR  180
ENVRDCTTSA HYCPVCICIA LTSGGAYLKG EASSIRRKLL YAIPPPSLSH SHPSSLRVLS  240
RRLQVAVCPR LS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.13e-34Trihelix family protein