PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62012581-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GeBP

Protein Properties

Length: 413aa MW: 44676.1 Da PI: 6.0243

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62012581-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	103.4	1.9e-32	176	265	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 klfqr++se+Dei++L+G+idfkak+g++p+ +id+fy f+kks++++vsk q+v+K+rrLKkKf + +kk +++++ + ++felskki AUR62012581-RA 176 KLFQRVFSEDDEILILKGMIDFKAKRGADPMIEIDDFYGFIKKSLHVEVSKVQIVDKVRRLKKKFFNAKKK-------KLTNPIEIQCFELSKKI 263 579***************************************************************999.......9************** PP DUF573 96 Wg 97 W+ AUR62012581-RA 264 WE 265 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MARNKAQKPL TEAPPEADSS EESASTSSQE LEEDQNSGSA ASSSDEEQTP STPPPPPASG 60 KKAPSSTAAS AAPTTVASGN KRPPPEDDSS SDDEEDEPTL HKIKPISKPG YESGTLGKGK 120 LKYTIAALPA GQIPEKRASE SELKSSSKKP RKEKSGSVTA AAAGVGGGVQ EEGSKKLFQR 180 VFSEDDEILI LKGMIDFKAK RGADPMIEID DFYGFIKKSL HVEVSKVQIV DKVRRLKKKF 240 FNAKKKKLTN PIEIQCFELS KKIWENNYSN VGDDVVVDDE KGTNGAAEIN NGNVGSKSNS 300 KARVLKIKSG ANAGPVVEDQ KKKNDKEEEV IDKSGKVVEV DEKDVELEVG EAVAWEELRK 360 KGLKMMGAKA RAEIGEMWEK VAMKQAEARI LRSEAEQEET RRIIEALRSG KH*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MARNKAQKPL TEAPPEADSS EESASTSSQE LEEDQNSGSA ASSSDEEQTP STPPPPPASG  60
KKAPSSTAAS AAPTTVASGN KRPPPEDDSS SDDEEDEPTL HKIKPISKPG YESGTLGKGK  120
LKYTIAALPA GQIPEKRASE SELKSSSKKP RKEKSGSVTA AAAGVGGGVQ EEGSKKLFQR  180
VFSEDDEILI LKGMIDFKAK RGADPMIEID DFYGFIKKSL HVEVSKVQIV DKVRRLKKKF  240
FNAKKKKLTN PIEIQCFELS KKIWENNYSN VGDDVVVDDE KGTNGAAEIN NGNVGSKSNS  300
KARVLKIKSG ANAGPVVEDQ KKKNDKEEEV IDKSGKVVEV DEKDVELEVG EAVAWEELRK  360
KGLKMMGAKA RAEIGEMWEK VAMKQAEARI LRSEAEQEET RRIIEALRSG KH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	247	RRLKKKFFNAKKKK
2	234	248	RRLKKKFFNAKKKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-18	GeBP family protein