PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62012844-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 365aa MW: 41499.3 Da PI: 7.0059

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62012844-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.2	4.4e-28	253	337	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +ev+aLi++r +++++ + +k+p W+ev++ m++ g++rs+ +Ckekwen+nk+ykk +++ kk se+ ++cpyf++le AUR62012844-RA 253 RWPTSEVQALITLRAALDHKFHTIGAKAPVWDEVAAGMAKMGYTRSARKCKEKWENVNKYYKKATDNGKKY-SENAKSCPYFHELE 337 8***************************************************************99997.788889****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MDDLFTNGRQ LTGAGFSEEL SPFPDPEPQP QPQFFYPHST TPVPQKLRPI RSNDSSFLRN 60 NACNSSDLGF LPFQPHFPTL QDDTSASAHQ LFKMKSDMDA HLLSNFNSCS DCSDDSAQKG 120 EEERTSNGKP KKKRKKMESF LQGLMSQVIN KQEQMHQQLM NMIENKEKER ILREEAWRQQ 180 ELDRANRDHQ IRAQEAARNV ALIYFIRNAL GVSELQVPDL LSLPQVFSGE DNVADAQSLG 240 QGEQDRFDPN YKRWPTSEVQ ALITLRAALD HKFHTIGAKA PVWDEVAAGM AKMGYTRSAR 300 KCKEKWENVN KYYKKATDNG KKYSENAKSC PYFHELETLY KNRLITAAKS NSPSNEDSEQ 360 NANV*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MDDLFTNGRQ LTGAGFSEEL SPFPDPEPQP QPQFFYPHST TPVPQKLRPI RSNDSSFLRN  60
NACNSSDLGF LPFQPHFPTL QDDTSASAHQ LFKMKSDMDA HLLSNFNSCS DCSDDSAQKG  120
EEERTSNGKP KKKRKKMESF LQGLMSQVIN KQEQMHQQLM NMIENKEKER ILREEAWRQQ  180
ELDRANRDHQ IRAQEAARNV ALIYFIRNAL GVSELQVPDL LSLPQVFSGE DNVADAQSLG  240
QGEQDRFDPN YKRWPTSEVQ ALITLRAALD HKFHTIGAKA PVWDEVAAGM AKMGYTRSAR  300
KCKEKWENVN KYYKKATDNG KKYSENAKSC PYFHELETLY KNRLITAAKS NSPSNEDSEQ  360
NANV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	136	KPKKKRKK
2	130	137	PKKKRKKM
3	132	136	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	5e-52	Trihelix family protein