PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62012889-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24474.2 Da    PI: 9.6533
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62012889-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.9e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRr+g++KKA+ELS+LCdae+a+i+fss++klye+s+
  AUR62012889-RA  9 KKIENIAARQVTFSKRRKGLIKKAQELSTLCDAEIALIVFSSSDKLYEFST 59
                    68***********************************************96 PP
2K-box59.11.8e-20921712099
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + a + ke+e  ++e+R+l+GedLe L ++eL +Le+q+ek+ + +R  K++ ll+++ +l++ke++l e+nk+L++k++
  AUR62012889-RA  92 DCAVVSKEVEDKRQELRRLKGEDLEGLGFEELVKLERQIEKAFTCVRRMKDDKLLRMVTDLKRKENKLIENNKDLNQKIK 171
                     5666788999999*****************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MVRSRIQIKK IENIAARQVT FSKRRKGLIK KAQELSTLCD AEIALIVFSS SDKLYEFSTS  60
RVTRVIQRYM RHTEKLPDDE QLDPYPVFLE DDCAVVSKEV EDKRQELRRL KGEDLEGLGF  120
EELVKLERQI EKAFTCVRRM KDDKLLRMVT DLKRKENKLI ENNKDLNQKI KNAIEGKSHA  180
SGQQLALFPE HNHIPNNSVS FDTNLRLGFI *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-39MIKC_MADS family protein