PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62013161-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20463.6 Da    PI: 7.0314
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62013161-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.71.3e-22248147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    +r e +snrqvtfskRr g++KKA+EL++LC++e+a+i+fs+  k +
  AUR62013161-RA  2 ERMEKDSNRQVTFSKRRCGLFKKASELCTLCGVEAAIIVFSPGKKAF 48
                    57899************************************987755 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MERMEKDSNR QVTFSKRRCG LFKKASELCT LCGVEAAIIV FSPGKKAFSF GHPSVEMVAN  60
RYYFSKYSPS SSSSDQDIKP PLGVGVGIHR SSAGVCDLNL ELTLINRQME MEKKRNEEMT  120
ETMMDLPIEL LSLENLERFK ASLEELKKHV IQQGLLLALH GSISFAEELK ENHTLNFIFN  180
V*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-37M-type_MADS family protein