PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62013338-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family YABBY
Protein Properties Length: 208aa    MW: 23244.1 Da    PI: 8.2267
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62013338-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY210.65.3e-65161806170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslk.eelleelkveeenlksnvekeesastsvsse 99 
                     sseq+Cy+ Cn+Cn   +vsvP + lf +vtvrCGhCt+l svn+a a + l+a+ + +++ + ++  ++ ++ e  ++   ++++++ ts++++
  AUR62013338-RA  16 SSEQLCYIPCNYCN---IVSVPCNNLFDIVTVRCGHCTNLWSVNMAAAFHSLSASWQQHQQQNfHQAPNNGNMGEYRIDNLGSSSKCNYTSKAAT 107
                     79***********9...69****************************999998876544444404455666778888888888888888887777 PP

           YABBY 100 kl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     ++  s   ++++++   ++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  AUR62013338-RA 108 TMriSPPISNNSSEERVINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 180
                     775666677777777789*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MSSTSCVDQA AVAPPSSEQL CYIPCNYCNI VSVPCNNLFD IVTVRCGHCT NLWSVNMAAA  60
FHSLSASWQQ HQQQNFHQAP NNGNMGEYRI DNLGSSSKCN YTSKAATTMR ISPPISNNSS  120
EERVINRPPE KRQRVPSAYN QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL  180
MLETNNQPKL DEGSQKHLMP RTALLNN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.15e-76YABBY family protein