PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62013396-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Whirly
Protein Properties Length: 234aa    MW: 25891.6 Da    PI: 10.0479
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62013396-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly193.23.8e-60591942138
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     vyk+kaa++ +++ p+f ++dsg +++kr+G++++++ ++++erkydW++kq fals+tev++l+ l++++sc+ffhdpa+++sn+G+vrk+l++
  AUR62013396-RA  59 VYKGKAAFSAEPIPPKFCKVDSG-IRVKRQGFIMMTFSPSVGERKYDWQRKQMFALSPTEVGSLLALGPNGSCDFFHDPAMQTSNAGQVRKSLSI 152
                     8********************99.689******************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                     +P pdG+G+f++lsvtn+++k+n++fsvPv+ aefav+r+ +
  AUR62013396-RA 153 KPSPDGTGYFMSLSVTNNITKTNDRFSVPVTSAEFAVMRTSF 194
                     ***************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MMKLASIFKS RGNVSGQLLN WNNPTQDAFG LHALMGCAGM STVGQKTFTN DRIFAPYYVY  60
KGKAAFSAEP IPPKFCKVDS GIRVKRQGFI MMTFSPSVGE RKYDWQRKQM FALSPTEVGS  120
LLALGPNGSC DFFHDPAMQT SNAGQVRKSL SIKPSPDGTG YFMSLSVTNN ITKTNDRFSV  180
PVTSAEFAVM RTSFSFALPH IMGWDRYSSQ PPVFKEENAT KVGLRSMDSE WDR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-80Whirly family protein