PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62013427-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 143aa MW: 16273.5 Da PI: 9.4752

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62013427-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87	1.1e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrngi+KKA E+ vLCda+v+v+if+++gk++ y AUR62013427-RA 9 KRIENSTNRQVTFSKRRNGIIKKATEITVLCDAKVSVVIFANNGKMHAYH 58 79*********************************************996 PP
2	K-box	62.1	2.1e-21	71	140	1	70
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 yq+ sg +l++ak+e+l++e++++kke++ ++ e+Rhl Ged++sL++ +L +Le++L+ + ++ ++K AUR62013427-RA 71 YQEFSGAKLWDAKHENLKNEIDRVKKENDDMRIELRHLNGEDIGSLQYPDLIRLEEALDIGTARVNDRKA 140 78889999************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KATEITVLCD AKVSVVIFAN NGKMHAYHSP 60 STTLEHILDK YQEFSGAKLW DAKHENLKNE IDRVKKENDD MRIELRHLNG EDIGSLQYPD 120 LIRLEEALDI GTARVNDRKA SI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-64	MIKC_MADS family protein