PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62013428-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 236aa MW: 25929.1 Da PI: 7.2253

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62013428-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.8	3.4e-19	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krien++nrqvt+skRrngi+KKA+E+ vLCda+ AUR62013428-RA 9 KRIENTTNRQVTYSKRRNGIIKKASEITVLCDAK 42 79******************************96 PP
2	K-box	49.3	2.1e-17	40	94	13	67
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRs 67 +a++l++e+++ kke++n+ e+Rhl+Ged+ +L + eL+qLe++Le++++++R AUR62013428-RA 40 DAKNLSNEIERNKKENDNMHIELRHLKGEDIATLPFTELRQLEDALEHGITSVRR 94 3589**************************************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MGRGKIEIKR IENTTNRQVT YSKRRNGIIK KASEITVLCD AKNLSNEIER NKKENDNMHI 60 ELRHLKGEDI ATLPFTELRQ LEDALEHGIT SVRRLEEERK ELTYVLGFKW GRVSAKVGEG 120 GAATRGNGWV GGLNLPRQKK SWLVEECVGV RGLLVEECVG VKGLLVEECV GVRGLLVEEC 180 VGVRGLLVEE CVGVRGLLVE ECVGVRGLLV EECVGVRGLL VEECVGGRGL LVGFL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	4e-33	MIKC_MADS family protein