PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62013578-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 406aa MW: 46449.7 Da PI: 8.971

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62013578-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.5	3.6e-23	117	213	1	86
trihelix 1 rWtkqevlaLiearremeerlr.rgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +W +++v++Li+a +++ e+ +g+ kk++W+++sk+m+ergf +sp+qC++k+++lnkrykk++e+ +k+ +++++++ + +d AUR62013578-RA 117 KWNNSMVKLLITAISYLSEDAFfEGSqgrrkyltlHKKGKWKSISKVMAERGFFVSPQQCEDKFNDLNKRYKKLNEILGKGtSCQVVEKPAILDM 211 7************98776552443566778888********************************************66999999999998 PP trihelix 85 le 86 ++ AUR62013578-RA 212 MD 213 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MDNNLSLANM MPGGGGSVYG GSELQGSMRV NHHQNPRTLQ PGQGLMNHPS LLHEILPLKM 60 GQCHSCDQPN SIADYNKGER VKNSQTDEED HSSNGEGMDG QSDLSKGKNV PQWHRVKWNN 120 SMVKLLITAI SYLSEDAFFE GSQGRRKYLT LHKKGKWKSI SKVMAERGFF VSPQQCEDKF 180 NDLNKRYKKL NEILGKGTSC QVVEKPAILD MMDHISEKSK EEVRKILSSK HLFYEELCSY 240 HNNNRLHLPP DPALQQSLQL ALRSRDDNDA AYALSGDPSK RMKQGLSLEN FNFRPQSTQD 300 FSKGFQLQPQ NPCVDMHAPL PESQKAALLQ NQWLKSQALQ LEEQKIHIES EALQLEKQRL 360 KWQRFCKRKD RELEKLKMEN DRMKLENDRI ALELKRMEMS TSSKN*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MDNNLSLANM MPGGGGSVYG GSELQGSMRV NHHQNPRTLQ PGQGLMNHPS LLHEILPLKM  60
GQCHSCDQPN SIADYNKGER VKNSQTDEED HSSNGEGMDG QSDLSKGKNV PQWHRVKWNN  120
SMVKLLITAI SYLSEDAFFE GSQGRRKYLT LHKKGKWKSI SKVMAERGFF VSPQQCEDKF  180
NDLNKRYKKL NEILGKGTSC QVVEKPAILD MMDHISEKSK EEVRKILSSK HLFYEELCSY  240
HNNNRLHLPP DPALQQSLQL ALRSRDDNDA AYALSGDPSK RMKQGLSLEN FNFRPQSTQD  300
FSKGFQLQPQ NPCVDMHAPL PESQKAALLQ NQWLKSQALQ LEEQKIHIES EALQLEKQRL  360
KWQRFCKRKD RELEKLKMEN DRMKLENDRI ALELKRMEMS TSSKN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-108	Trihelix family protein