PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62014383-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 150aa    MW: 16671.1 Da    PI: 10.5656
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62014383-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.8e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRr+g+lKK eEL vLCdaev viifsstgklyey+s
  AUR62014383-RA 10 RIDNTTSRQVTFSKRRKGLLKKSEELGVLCDAEVGVIIFSSTGKLYEYAS 59
                    8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MGRGKIVIRR IDNTTSRQVT FSKRRKGLLK KSEELGVLCD AEVGVIIFSS TGKLYEYASN  60
RAQTLSHLGK DAILIPQIGG DGWISGKVEM RKRDFCFAAT FKAWKGRRRG GQHGKDDQRW  120
AGKKKIGLRD GGCDDEKEGG RSNYYNCVI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.17e-33MIKC_MADS family protein