PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62014442-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24193.6 Da    PI: 9.1274
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62014442-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.6e-27956148
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    k+ien++nrqvt+skRrng++KKA EL vLCda v++i++ss++kl+e
  AUR62014442-RA  9 KKIENQTNRQVTYSKRRNGLFKKATELAVLCDASVSIIMISSSNKLHE 56
                    68*********************************************8 PP
2K-box74.33.5e-2571164194
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     yq+ + ++l++++++++q++l+ L++ ++ Lq+ +R+++G++Le+L + eL+ Le+++ +++k iR++K++ + ++i++++kk    +e +  L
  AUR62014442-RA  71 YQRDREVDLWAKQYQNMQKQLQDLNEINRGLQKDIRRRMGDCLEDLAIDELRCLEEEMVNAVKVIRERKTKKIDNNIDTSKKKDIPKEESQYGL 164
                     56666777***************************************************************************99888877665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KATELAVLCD ASVSIIMISS SNKLHEQHSP  60
GITPKQVYDK YQRDREVDLW AKQYQNMQKQ LQDLNEINRG LQKDIRRRMG DCLEDLAIDE  120
LRCLEEEMVN AVKVIRERKT KKIDNNIDTS KKKDIPKEES QYGLVDNGEY NHVLGYNDDN  180
RILALRLQPC QPNLHAGAGS GSCVTTYTLL *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-74MIKC_MADS family protein